CESSHIV-1 database

General information on HIV-1 isolate

# 1976

Accession number	AF239654
Name	PAIR19_MOTHER
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	19-mother

AF239654 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191651(#1177) AB254149(#812) AF411967(#238) AY805330(#416) AY921356(#2116)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy