CESSHIV-1 database

General information on HIV-1 isolate

# 1555

Accession number	AM076854
Name	PG184_16
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG184

AM076854 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtggac cagatctgag cccgggcgct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AM076853(#1554) AM076855(#1556)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy