CESSHIV-1 database

General information on HIV-1 isolate

# 3175

Accession number	AY047302
Name	TV008
Subtype	C
Country	South Africa (Zimbabwe)
Sampling year	1998
Patient	TV008

AY047302 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtggac cagatctgag cccgggagct ctctggctac ttagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AY047303(#3176) AY047304(#3180)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy