CESSHIV-1 database

General information on HIV-1 isolate

# 1332

Accession number	AY452652
Name	PHD74H4
Subtype	C
Country	Ethiopia
Sampling year	1997
Patient	74

AY452652 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatcagag cctgggagct ctctggctat ct--ggaaccca ctg-ttaa-cct caataaagct tgccttgagt gctctaagta gtgtgtgccc gtctgttgtg tgactctggt aa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy