CESSHIV-1 database

General information on HIV-1 isolate

# 2165

Accession number	AY932695
Name	TZLM651
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	651

AY932695 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagata-gagc ctgggagctc tctggctagc gggggaaccc actgcttaag cctcaataaa gcttgccttg agtgcctaaa gcagtgtgtg cccgtctgtt gtatgactct ggtaa

Isolates with identical sequences of region:

AY932677(#2147) AY932742(#2210)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy