CESSHIV-1 database

General information on HIV-1 isolate

# 1438

Accession number	DQ853470
Name	14202_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853470 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ccgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtag

Isolates with identical sequences of region:

DQ853466(#1434) DQ853468(#1436) DQ853469(#1437) DQ853472(#1440)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy