CESSHIV-1 database

General information on HIV-1 isolate

# 1720

Accession number	EF370243
Name	06JWK1_2610
Subtype	B
Country	South Korea
Sampling year	2006
Patient	WK(JWK)

EF370243 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttaa agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF363122(#964) EF363123(#965) EF370179(#1453)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy