CESSHIV-1 database

General information on HIV-1 isolate

# 2259

Accession number	EF370327
Name	05KJM2_2358
Subtype	B
Country	South Korea
Sampling year	2005

EF370327 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctga ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF370328(#1771) EF370344(#1783)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy