CESSHIV-1 database

General information on HIV-1 isolate

# 2952

Accession number	EU835825
Name	mnp47
Subtype	C
Country	India
Submitted to NCBI	2008
Patient	mnp47

EU835825 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatttgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctctg agcagtgtgt gcccgtctat tgtgtaactc tggtaa

Isolates with identical sequences of region:

EU835828(#2955)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy