CESSHIV-1 database

General information on HIV-1 isolate

# 2965

Accession number	EU835840
Name	mnp60
Subtype	C
Country	India
Submitted to NCBI	2008
Patient	mnp60

EU835840 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctctg agcagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF592603(#3021) EU835827(#2954)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy