CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2313
Accession number EU938117
Name 03RU950
SubtypeA
CountryRussia
Sampling year 2003

EU938117 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatc-gagc ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtaatgtgtg cccgtctgtt gtatgactct ggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy