CESSHIV-1 database

General information on HIV-1 isolate

# 3431

Accession number	GQ222256
Name	c2008_26966
Subtype	B
Country	Germany
Sampling year	2008

GQ222256 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcct-g agtgcttcaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

AB480697(#2722)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy