CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3278
Accession number GQ386790
Name K2p1
SubtypeB
CountrySpain
Sampling year 1989
Patient89ES061

GQ386790 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctat tgtgtgactc tggtag

Isolates with identical sequences of region:

GQ386784(#3272) GQ386785(#3273) GQ386786(#3274) GQ386787(#3275) GQ386788(#3276) GQ386789(#3277) GQ386791(#3279) GQ386792(#3280)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy