CESSHIV-1 database

General information on HIV-1 isolate

# 2530

Accession number	U80511
Name	LTS5
Subtype	B
Country	Venezuela
Sampling year	1993
Patient	LTS5

U80511 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB221125(#732) AB221126(#733) AB485664(#2755) AB485665(#2756) AY610963(#1995)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy