CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 759
Accession number AB253636
Name pJPDR1741AE09
SubtypeCRF01_AE
CountryJapan
Submitted to NCBI 2006
PatientDR1741

AB253636 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gctttc-gctt gtactgggtc tctcttgtta gaccaggtc-g agcccgggag ctctctggct agcaggggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt aaagtggtgt gtgcccattt gtgtcaggac tctggtaa

Isolates with identical sequences of region:

AB253673(#796) AB253674(#797) AB253675(#798) AB253677(#800)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy