CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2100
Accession number AY851679
Name SP_LTNP2
SubtypeB
CountrySpain
Submitted to NCBI 2004
PatientLTNP2

AY851679 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

tgagccctca gatgctgcat ataagcagct gctctttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg cctcgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtag

Isolates with identical sequences of region:

AY851670(#2092)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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