CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2205
Accession number AY932737
Name TZLM691
Subtype
CountryTanzania
Submitted to NCBI 2005
Patient691

AY932737 isolate has foldings of [PBS region] [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gaagctgcat ataagcagct gctttttgct tgtactgggt ctctcttgtt agaccagatt tgagcctgag agctctctgg ctaa---------------------------------------------------gtagtg tgtgcccatc tgt-gtgtgac tctggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy