CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 968
Accession number EF363126
Name ES8-43
SubtypeB
CountryUSA
Sampling year 2004
PatientES8

EF363126 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatt tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg cctttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta a

Isolates with identical sequences of region:

EF363125(#967)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012