CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2231
Accession number EF370197
Name 93LSK10b_2641s
SubtypeB
CountrySouth Korea
Sampling year 1993
PatientLSK

EF370197 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa

Isolates with identical sequences of region:

EF370183(#1456) EF370233(#1722) EF370237(#3012) EF370242(#1719) EF370285(#2253) EF370305(#1753) EF370360(#1779) EF370369(#1796) EU047626(#1828) EU047627(#1829) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047633(#2942) EU047634(#1833) EU047645(#1843)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy