CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3178
Accession number EF370256
Name 04CWS5_1991s
SubtypeB
CountrySouth Korea
Sampling year 2004
PatientCWS

EF370256 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

caaaccctca aatgctgcat aaaagcagct gctttctgcc tgtactgggt ctctctggtt aaaccaaatc caagcctaaa agctctctgg ctaactaaaa aacccactgc ttaagcctca ataaagcttg ccttaagtgc cttaagtagt gtgtgcccgt ctgttgtgta actctagtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy