CESSHIV-1 database

General information on HIV-1 isolate

# 1827

Accession number	EU047625
Name	96HSH8_3343s1
Subtype	B Korean
Country	South Korea
Sampling year	1996
Patient	HSH(KR39)

EU047625 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

tgagccctca gatgctgcat aaaagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

EU047615(#1817) EU047619(#1821) EU047620(#1625) EU047621(#1823) EU047623(#1825) EU047624(#1826)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy