CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2388
Accession number FJ614966
Name 08MHI4_4657
SubtypeCRF02_AG
CountrySouth Korea (Africa)
Sampling year 2008
PatientMHI

FJ614966 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctagccctca gacgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcaaagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa

Isolates with identical sequences of region:

FJ614960(#2383)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy