CESSHIV-1 database

General information on HIV-1 isolate

# 276

Accession number	AB098333
Name	pUG029-A4
Subtype	A1
Country	Uganda
Sampling year	1992
Patient	UG029

AB098333 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctcttgtt agaccagata -gagtctggga actctctggc tagcgaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagaaggtg ta-aaaatctc tagca

Isolates with identical sequences of region:

AB098332(#275)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy