Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 809
Accession number AB254146
Name p02ZM114C27
Sampling year 2002

AB254146 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc tgagcctgag agctctctgg ctgtctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccaa tttggt-agtg tggaaaatct ctagca

Isolates with identical sequences of region:

AB254143(#806) AB254144(#807) AB254145(#808) AB254147(#810) AB254150(#813) AB254151(#814) AB254152(#815) AB254153(#816) AB254154(#817)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy