CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 286
Accession number AF414006
Name 98BY10443
SubtypeCRF03_AB
CountryBelarus (Russia)
Sampling year 2000
PatientBY10443

AF414006 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctcttgtt agaccagatc -gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg tgtgcccgtc tgttgtatga ctctggtaac tagagatccc tcagaccact ctagacggtg taaaaaatct ctagca

Isolates with identical sequences of region:

AF413988(#1353) AF413989(#1354)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012