CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2325
Accession number FJ614894
Name 01LKD2_4087
SubtypeCRF02_AG
CountrySouth Korea (Ghana)
Sampling year 2001
PatientLKD

FJ614894 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcg-gaga acccactgct taagcctcaa taaagcttgc cttgagtgct taaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgcg ta-aaaatctc tagca

Isolates with identical sequences of region:

FJ614895(#2326)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy