CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3290
Accession number GU177863
Name plwj
SubtypeB'
CountryChina
Sampling year 1999
PatientLWJ

GU177863 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagcccgcc gatgctgcat ataagcagcc gctttt-gcct gtactgggtc tctctagtca gaccagatca gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tagtcagtgt ggaaaatctc tagca

Isolates with identical sequences of region:

GU647198(#3318)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy