CESSHIV-1 database

General information on HIV-1 isolate

# 15

Accession number	M38429
Name	JRCSF
Subtype	B
Country	USA
Sampling year	1986
Patient	JR

M38429 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

AB287371(#937) AF042101(#123) AY851681(#2102) U80520(#2539) U80525(#2544) U80527(#2546) U80539(#2558) U81454(#2559) U81477(#2582)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy