CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2508
Accession number U51288
Name 92ug975
SubtypeG
CountryUganda
Sampling year 1992
Patient975

U51288 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagggg aacccactgc ttaaagcctc aataaagctt gccttgagtg cttaaagtag tgtgtgcccg tctggtgtgt gactctggta actagagatc cctcagacca ctctagatag tgta-aaaatc tctagca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012