CESSHIV-1 database

General information on HIV-1 isolate

# 2816

Accession number	AF102199
Name	ET2222
Subtype	C
Country	Ethiopia
Submitted to NCBI	1998
Patient	ETH2222

AF102199 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccaaccctca gatgctgcat ataagcagct gcctttcgct tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctgggg aacccactgc ttaagcctca ataaagtttg ccttgagtgc ttcaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy