CESSHIV-1 database

General information on HIV-1 isolate

# 3575

Accession number	AF102204
Name	GM6139
Subtype	G
Country	Gambia
Submitted to NCBI	1998
Patient	6139

AF102204 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttctcgcc tgtactgggt ctcttttgtt agaccagatt tgagcctggg agctctctgg ctagcagagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy