CESSHIV-1 database

General information on HIV-1 isolate

# 3585

Accession number	AF102217
Name	TN5614
Subtype	B
Country	Tunisia
Submitted to NCBI	1998
Patient	5614

AF102217 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagcccaca gatgttgcat ataagcagcc gcttttcgcc tgtgctgggt ctctctggtt agaccagatc tgagcctggg ggctctctgg ctgactaggg aacccactgc ytaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy