CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1279
Accession number AF196708
Name 95TH85
SubtypeB
CountryThailand
Sampling year 1995

AF196708 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttt-gcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AB287368(#934) L28889(#2457) U73099(#2524)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy