CESSHIV-1 database

General information on HIV-1 isolate

# 1299

Accession number	AF196731
Name	94ET93
Subtype	C
Country	Ethiopia
Sampling year	1994

AF196731 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

AF254710(#1498)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy