CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1524
Accession number AF254737
Name G64, G641
SubtypeU
CountryTanzania
Sampling year 1996
Patient64

AF254737 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

EU293450(#1210)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy