CESSHIV-1 database

General information on HIV-1 isolate

# 2822

Accession number	AY353951
Name	Pt_5
Subtype	B
Country	Canada
Submitted to NCBI	2003

AY353951 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

caagccctca aatgctgcat ataagcagct gctttt-gcct gtactaggtc tctctagtta aaccaaatct aagcctggaa gctctctggc taactaggaa acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy