CESSHIV-1 database

General information on HIV-1 isolate

# 3733

Accession number	DQ848378
Name	ib16
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848378 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

caagccctca gatgctgcgt ataagcagct actttctgcc tgtactaagt ctctctagtt agaccagatc tgagcctaag agctctctag ctaactaaag aacccactgc ttaagcctca ataaagcttg ccttaagtgc tttaagtaat gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy