CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3126
Accession number DQ848414
Name ic11
SubtypeB
CountryUSA
Sampling year 1990
PatientC-child

DQ848414 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctagct agaccagatc tgagcctggg agctctctgg ttgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848410(#3122) DQ848412(#3124) DQ848413(#3125) DQ848415(#3127) DQ848417(#3129) DQ848420(#3132) DQ848423(#3060)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy