CESSHIV-1 database

General information on HIV-1 isolate

# 3011

Accession number	EF370227
Name	03KJin9d_2884s2
Subtype	B
Country	South Korea
Sampling year	2003
Patient	KJin

EF370227 isolate has foldings of [USE domain, TAR, polyA] [USE region] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttctgct tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaggcctca ataaagcttg ccttgagtgg gggacatcag gc

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy