CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1723
Accession number EF370234
Name 96JWK4_2688
SubtypeB
CountrySouth Korea
Sampling year 1996
PatientWK(JWK)

EF370234 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

caaaccttca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctttctggtt agaccagatt tgaccctggg agctttctgg ctgattaggg aacccactgc ttaagcttca ataaagcttc ccttgagtgc tttaagtagt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy