CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3255
Accession number GQ386774
Name D1p1
SubtypeB
CountrySpain
Sampling year 1989
Patient89ES061

GQ386774 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagcc gctttt-gctt gtactgggtc tctcttgtta gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AF256205(#81) AF256211(#84) GQ386775(#3257) GQ386776(#3206) GQ386777(#3258) GQ386778(#3263)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy