CESSHIV-1 database

General information on HIV-1 isolate

# 3872

Accession number	HM583632
Name	Vin44
Subtype	A1
Country	Ukraine
Sampling year	2009

HM583632 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctggtt agaccagatc -gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg t

Isolates with identical sequences of region:

AF413990(#1355) EU938085(#2281) EU938086(#2282) EU938087(#2283) EU938094(#2290) EU938095(#2291) EU938098(#2294) EU938099(#2295) EU938102(#2298) EU938104(#2300) EU938107(#2303) EU938109(#2305) EU938115(#2311) EU938122(#2318) EU938123(#2319) HM583610(#3850) HM583624(#3864) HM583636(#3876)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy