CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3075
Accession number U63536
Name Kond, TYGE1
SubtypeC
CountrySouth Africa
Sampling year 1990
PatientKond

U63536 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctaggg aacccactgc ttaagcctca ataaagcttg ccttgagcgc ttcaagtagt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy