CESSHIV-1 database

General information on HIV-1 isolate

# 2576

Accession number	U81471
Name	VE18NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	18

U81471 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctcttgtt agaccagatc tgagcccggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy