CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 908
Accession number AB253425
Name p93TH057AE22
SubtypeCRF01_AE
CountryThailand
Sampling year 1993
PatientTH057

AB253425 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc ataaaagcag ccgcttttcg cttgtacgag gtctctcttg ttagaccagg tc-gagcccgg gagctctctg gctagcaagg gaacccactg cttaaagcct caataaagct tgccttgagt gcttaaagtg gtgt

Isolates with identical sequences of region:

AB253424(#907) AF197338(#227)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy