CESSHIV-1 database

General information on HIV-1 isolate

# 3577

Accession number	AF102207
Name	SO6173
Subtype	C
Country	Somalia
Submitted to NCBI	1998
Patient	6173

AF102207 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

accggggagt ggccaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctag gtagaccaga tttgagcctg ggagctctct ggctatctgg ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy