CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3584
Accession number AF102216
Name TH6098
SubtypeCRF01_AE
CountryThailand
Submitted to NCBI 1998
Patient6098

AF102216 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc ataaaagcag ccgcttttcg cttgtactgg gtctctcttg ttagaccagg tc-gagcccgg gagctctctg gctagcaagg gaacccactg cttaaagcct caataaagct tgccttgagt gcttcaagta gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012