CESSHIV-1 database

General information on HIV-1 isolate

# 1309

Accession number	AF196743
Name	93TN68
Subtype	A
Country	Tanzania
Sampling year	1993

AF196743 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctcttg ttagaccaga tc-gagcctgg gagctctctg gctagcgagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

Isolates with identical sequences of region:

AF254683(#1473) U51286(#2506)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy