CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 81
Accession number AF256205
Name S61D15
SubtypeB
CountrySpain
Sampling year 1989
Patient89ES061

AF256205 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ccgctttt-gc ttgtactggg tctctcttgt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

Isolates with identical sequences of region:

AF256211(#84) GQ386774(#3255) GQ386775(#3257) GQ386776(#3206) GQ386777(#3258) GQ386778(#3263)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy