CESSHIV-1 database

General information on HIV-1 isolate

# 1556

Accession number	AM076855
Name	PG184_17
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG184

AM076855 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gtcaaccctc agatgctgca tataagcagc cgctttacgc ctgtactggg tctctctagg tggaccagat ctgagcccgg gcgctctctg gctatctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctaagtag tgt

Isolates with identical sequences of region:

AM076853(#1554) AM076854(#1555)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy